AtGenExpress

Microarray data and sample descriptions from the AtGenExpress project

Interactive visualization of AtGenExpress data

Sample List (Light) (.xls)
AtGenExpress light series sample list and description

Abiotic stress analysis paper (.pdf)
To cite data from the abiotic stress set, please refer to: Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., D'Angelo, Bornberg-Bauer, E., Kudla, J., and Harter, K. (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50, 347-363.

Expression data (Light) (.zip)
AtGenExpress (Light) expression estimates by gcRMA

Sample list (Pathogen) (.xls)
AtGenExpress pathogen series sample list and description

Marker genes (Development) from Schmid et al., 2005 (.txt)
Marker genes for different tissues as shown in Figure 1c of Schmid et al. (2005) Nat. Genet. 37, 501-506.

READ ME - Development (.txt)
To cite data from the developmental set, please refer to: Schmid, M., Davison, T. S., Henz, S. R., Pape, U. J., Demar, M., Vingron, M. Schölkopf, B. Weigel, D., and Lohmann, J. (2005) A gene expression map of Arabidopsis development. Nature Genetics, 37, 501-506.

Expression data (Development) (.zip)
AtGenExpress (Development) expression estimates by gcRMA

Expression data (Ecotypes) (.gz)
AtGenExpress (Ecotypes) expression estimates by gcRMA

Sample list (Development) (.pdf)
AtGenExpress developmental series sample list and description

Expression data (Abiotic stress) (.zip)
AtGenExpress (Abiotic stress) expression estimates by gcRMA

Sample list (Abiotic stress) (.pdf)
AtGenExpress abiotic stress series sample list and description

Sample list (Ecotypes) (.xls)
AtGenExpress ecotypes series sample list and description

Probe preparation (Development) (.pdf)
AtGenExpress developmental series probe preparation protocol

Expression data (Pathogen) (.zip)
AtGenExpress (Pathogen) expression estimates by gcRMA


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