AtGenExpress Visualization Tool (AVT)


Select experiment
Select normalization        only create tab-delimited file
Select genes
enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

Mouse over for sample and expression information.
plot
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 261580_at (at1g01110)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 46.3480
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 33.6498
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 14.9251
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 19.6558
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 15.2842
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 14.7537
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 13.0626
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 16.8819
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 19.3858
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 16.6933
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 7.0462
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 9.2307
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 10.8511
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 8.8995
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 10.0095
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 14.0658
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 11.0004
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 10.9483
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 12.9800
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 12.0522
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 9.8265
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 25.0440
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 10.4430
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 10.5935
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 12.4902
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 7.9514
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 8.7919
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 13.5644
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 10.6271
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 10.7446
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 13.8330
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 15.0727
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 13.0514
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 14.6140
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 18.4199
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 11.2996
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 14.8127
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 14.6465
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 14.3620
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 27.1875
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 96.0070
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 118.3011
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 118.4331
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 99.4209
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 105.0228
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 151.3611
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 113.0477
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 117.6772
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 105.3611
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 84.1637
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 86.1970
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 40.6778
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 43.4154
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 78.0498
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 45.4606
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 71.3241
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 49.0438
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 79.0255
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 81.2265
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 22.4425
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 59.4157
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 33.1201
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 11.7256
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 8.0793
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 94.5427
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 18.4937
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 15.3294
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 8.7930
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 16.7925
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 93.7847
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 50.7682
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 16.0129
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 9.9582
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 11.0292
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 15.6178
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 11.6140
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 10.5104
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 10.4898
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 12.7097


get table as tab-delimited text file