AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 253958_at (at4g26400)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 482.8754
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 800.5349
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 197.1410
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 423.7740
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 247.0825
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 411.7669
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 258.8197
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 531.8813
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 470.7842
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 760.7294
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 756.3440
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 575.3410
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 252.1271
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 393.6494
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 388.5186
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 671.8703
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 723.0485
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 737.2746
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 708.6420
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 655.0426
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 370.0137
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 603.1308
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 749.1703
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 859.6568
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 407.5311
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 224.6053
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 442.6747
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 199.7248
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 813.3421
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 497.2523
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 863.4899
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 756.8539
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 758.9913
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 369.2592
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 355.3647
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 271.8684
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 408.0637
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 402.9486
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 512.0729
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 360.9893
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 290.4118
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 304.3219
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 368.8152
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 292.4801
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 334.1746
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 318.7373
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 305.2061
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 260.6155
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 248.6180
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 314.8558
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 348.6842
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 469.6773
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 463.5004
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 330.1254
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 498.0257
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 337.9138
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 391.4785
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 298.8947
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 297.1470
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 643.9477
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 265.0422
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 511.4262
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 373.1293
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 316.6332
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 658.8192
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 279.4506
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 1847.4361
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 2633.4653
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 8473.0349
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 534.1176
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 442.9792
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 695.1133
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 363.4722
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 405.9421
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 527.4010
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 375.8525
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 234.7071
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 124.8566
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 114.9414


get table as tab-delimited text file


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