AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
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254595_at; then press "Run"

AtGenExpress
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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 258809_at (at3g04070)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 48.5733
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 34.9873
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 649.5454
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 191.6013
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 585.4872
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 717.0328
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 2824.5596
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 79.2945
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 34.1628
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 18.2159
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 60.8361
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 19.5395
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 15.4276
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 13.7246
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 106.3842
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 47.2485
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 35.4890
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 18.5711
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 17.4545
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 10.9847
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 14.8776
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 42.2438
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 12.0764
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 28.4559
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 51.8318
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 2621.8572
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 121.0324
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 10.9488
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 359.7597
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 445.8103
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 647.9352
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 648.4559
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 40.1216
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 30.2545
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 48.3872
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 19.4436
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 20.0529
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 53.1105
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 12.1889
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 24.5698
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 12.5708
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 13.3818
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 14.3932
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 16.4716
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 13.9792
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 18.7374
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 14.2251
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 10.8907
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 17.2799
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 16.0328
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 18.2537
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 45.2788
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 35.3491
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 18.9493
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 78.3429
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 38.8312
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 182.8357
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 47.6506
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 89.6052
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 1840.3532
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 20.5865
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 39.1971
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 389.9053
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 4481.6546
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 18.8450
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 4507.7021
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 134.6879
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 3844.9618
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 39.6947
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 18.4677
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 106.0747
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 183.4517
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 50.6165
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 65.0340
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 102.0480
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 323.9000
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 113.0616
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 359.1284
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 178.8917


get table as tab-delimited text file


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