AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 251705_at (at3g56400)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 271.5222
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 488.0686
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 155.1268
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 70.9906
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 49.3017
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 60.8952
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 76.4122
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 720.5293
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 789.7918
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 1157.6148
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 2145.7192
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 1668.8093
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 883.3511
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 3055.9496
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 1625.3774
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 2508.1067
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 2229.4906
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 1976.6208
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 2012.5790
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 1558.5279
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 2393.8750
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 1059.5849
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 1761.6288
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 1954.4187
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 969.4135
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 3353.6198
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 2071.6035
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 245.5798
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 173.7348
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 979.5880
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 1282.7684
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 1959.0257
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 2467.5344
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 1766.0025
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 2287.7083
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 152.5688
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 347.2290
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 406.3517
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 968.1279
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 546.4370
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 625.7002
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 510.2961
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 654.1737
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 1236.3076
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 1156.2818
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 852.1561
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 1236.3023
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 648.6513
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 559.3831
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 487.9376
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 641.1652
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 413.8725
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 192.2586
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 1917.7126
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 919.7869
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 521.3190
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 1360.2476
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 580.7224
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 1178.7996
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 1630.2594
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 242.6850
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 2246.9199
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 1479.9187
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 3376.5152
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 221.3992
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 692.6624
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 34.4688
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 610.8620
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 33.1815
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 391.0881
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 351.0547
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 589.1479
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 192.3687
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 173.6574
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 21.2216
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 12.7986
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 23.0646
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 19.8692
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 18.2888


get table as tab-delimited text file


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