AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 251553_at (at3g58710)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 339.0286
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 317.5713
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 315.0259
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 352.5364
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 410.6741
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 311.7970
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 319.9786
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 95.7013
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 48.8507
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 46.4781
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 27.7116
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 28.4034
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 22.1743
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 23.8657
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 51.7872
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 29.5258
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 23.1460
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 25.4635
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 26.3868
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 24.1395
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 27.1181
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 30.1971
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 29.5713
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 26.6257
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 22.7406
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 58.8537
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 33.9085
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 15.8186
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 66.5861
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 48.9167
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 74.1289
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 59.5780
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 28.3964
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 21.7037
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 26.2434
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 30.6180
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 47.2188
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 53.8910
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 32.6755
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 30.9201
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 25.4034
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 29.6898
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 24.4958
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 26.3332
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 23.8938
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 26.2957
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 29.5144
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 25.7992
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 24.4684
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 23.5080
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 24.1193
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 21.6836
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 24.0696
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 24.2700
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 29.1934
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 24.1720
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 25.3561
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 19.7901
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 22.5681
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 25.7479
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 20.8060
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 16.2778
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 23.8817
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 31.0660
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 18.1597
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 39.5051
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 31.3413
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 55.4095
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 15.9369
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 24.2814
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 22.6890
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 22.6309
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 18.3073
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 21.7501
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 25.1333
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 26.0568
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 79.9757
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 97.2445
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 93.1653


get table as tab-delimited text file


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