AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 251467_at (at3g59470)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 87.7416
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 100.5303
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 59.3473
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 77.0083
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 73.6564
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 73.6473
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 56.5909
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 52.5052
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 49.5921
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 53.8360
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 41.0139
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 42.0842
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 50.1633
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 42.0350
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 40.6528
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 45.0321
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 40.8440
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 33.3404
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 40.0767
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 38.4948
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 56.3987
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 37.9243
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 45.3187
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 47.9131
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 40.7684
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 67.5414
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 45.5179
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 44.6630
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 41.8490
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 30.2233
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 34.4474
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 37.8001
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 46.5869
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 48.4175
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 51.8157
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 34.0870
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 48.4647
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 50.8905
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 58.6908
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 63.1958
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 107.3424
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 78.8059
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 99.5414
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 83.6911
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 104.9662
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 90.9891
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 83.0177
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 96.0027
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 73.0229
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 74.6073
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 72.7691
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 52.6657
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 54.9698
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 87.3294
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 103.8248
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 70.7573
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 77.5596
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 82.9053
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 70.0303
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 46.0477
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 63.9747
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 47.3925
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 38.7205
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 43.7226
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 63.2403
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 54.0473
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 59.4706
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 52.8171
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 94.3923
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 69.5496
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 62.3101
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 55.0198
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 46.0578
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 37.4439
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 42.8526
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 40.2352
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 85.0242
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 49.9110
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 69.5837


get table as tab-delimited text file