AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord coord

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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 254231_at (at4g23810)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 127.0433
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 456.9132
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 23.1375
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 100.9142
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 30.4579
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 211.7155
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 51.7716
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 116.9709
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 131.3627
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 218.0613
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 667.2415
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 120.9512
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 33.1240
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 532.5980
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 483.9100
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 741.5722
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 571.3337
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 456.5419
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 413.5195
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 360.7677
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 170.6284
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 197.1964
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 457.1305
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 625.5292
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 36.3867
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 1648.9119
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 653.5733
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 11.9492
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 353.2696
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 519.6968
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 448.7114
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 760.3139
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 858.9395
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 116.2329
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 177.7383
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 20.2606
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 22.3347
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 29.6225
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 40.4023
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 15.4127
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 10.9539
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 17.2527
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 16.0706
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 20.7469
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 14.5913
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 16.8705
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 24.1267
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 14.6525
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 15.8059
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 20.4321
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 25.0371
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 27.0809
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 15.0530
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 54.3569
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 40.3483
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 20.1185
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 94.0063
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 63.2635
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 76.4473
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 209.5951
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 14.8886
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 125.2718
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 200.2952
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 752.9273
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 13.1529
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 41.3613
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 8.5599
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 23.3595
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 23.3490
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 34.4411
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 73.9129
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 40.1855
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 27.6837
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 18.9824
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 11.3740
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 9.6706
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 12.1289
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 23.6392
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 48.1210


get table as tab-delimited text file


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