AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
separated), e.g.:At5G61850, At5G57090, At1G29910,
254595_at; then press "Run"

AtGenExpress
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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 253603_at (at4g30935)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 122.9337
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 94.8570
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 103.9966
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 138.9641
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 96.1806
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 168.9380
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 147.0043
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 163.4728
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 126.0863
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 94.1690
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 69.9175
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 72.1290
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 84.3346
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 76.4390
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 95.3998
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 77.8676
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 66.3175
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 78.7780
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 82.3602
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 90.7090
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 87.5267
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 92.9063
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 82.5902
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 67.5278
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 104.7590
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 120.6825
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 97.8814
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 97.8424
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 76.9973
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 77.2311
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 89.5527
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 99.1565
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 89.7195
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 109.1267
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 98.6360
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 69.4522
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 116.0144
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 123.3986
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 125.6366
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 183.6717
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 196.9757
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 204.7491
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 270.6716
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 196.5667
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 224.4138
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 208.0393
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 183.4275
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 169.5172
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 196.8800
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 202.2874
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 199.1590
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 182.7863
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 219.1565
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 143.4854
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 193.0600
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 205.7957
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 191.7555
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 186.5666
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 319.2671
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 114.3953
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 195.7326
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 70.8835
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 87.2733
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 110.2919
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 254.4703
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 149.5076
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 160.1746
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 151.8968
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 196.1588
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 155.9566
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 130.4752
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 115.5748
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 140.9089
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 142.3902
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 150.9643
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 256.8380
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 1148.5146
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 1316.4437
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 1467.1314


get table as tab-delimited text file


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