AtGenExpress Visualization Tool (AVT)


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enter desired AGI or Affymetrix identifiers (comma
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254595_at; then press "Run"

AtGenExpress
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Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M.,
Schölkopf, B., Weigel, D. and Lohmann, J.U. (2005). A gene expression
map of Arabidopsis thaliana development. Nat. Genet. 37, 501-6.

back to AtGenExpress main page Explanation to samples and expression values

developer: Christian K. Widmer

get table as tab-delimited text file


tissue cluster tissue genotype age sample Id stress time treatment expression value for 245934_at (at5g09330)
root roots Wt 7 days ATGE_3 not applicable not applicable not applicable 484.2306
root roots Wt 17 days ATGE_9 not applicable not applicable not applicable 509.4813
root root Wt 15 days ATGE_93 not applicable not applicable not applicable 514.1035
root root Wt 8 days ATGE_94 not applicable not applicable not applicable 641.1769
root root Wt 8 days ATGE_95 not applicable not applicable not applicable 687.5755
root root Wt 21 days ATGE_98 not applicable not applicable not applicable 692.3032
root root Wt 21 days ATGE_99 not applicable not applicable not applicable 632.5539
stem hypocotyl Wt 7 days ATGE_2 not applicable not applicable not applicable 578.2116
stem 1st node Wt 21+ days ATGE_28 not applicable not applicable not applicable 560.4362
stem stem, 2nd internode Wt 21+ days ATGE_27 not applicable not applicable not applicable 575.0793
leaf cotyledons Wt 7 days ATGE_1 not applicable not applicable not applicable 412.4051
leaf leaves 1 + 2 Wt 7 days ATGE_5 not applicable not applicable not applicable 309.9467
leaf rosette leaf #4, 1 cm long Wt 10 days ATGE_10 not applicable not applicable not applicable 360.8467
leaf rosette leaf #4, 1 cm long gl1-T 10 days ATGE_11 not applicable not applicable not applicable 327.2736
leaf rosette leaf # 2 Wt 17 days ATGE_12 not applicable not applicable not applicable 374.3924
leaf rosette leaf # 4 Wt 17 days ATGE_13 not applicable not applicable not applicable 410.0264
leaf rosette leaf # 6 Wt 17 days ATGE_14 not applicable not applicable not applicable 430.0906
leaf rosette leaf # 8 Wt 17 days ATGE_15 not applicable not applicable not applicable 377.5527
leaf rosette leaf # 10 Wt 17 days ATGE_16 not applicable not applicable not applicable 381.0891
leaf rosette leaf # 12 Wt 17 days ATGE_17 not applicable not applicable not applicable 376.2562
leaf rosette leaf # 12 gl1-T 17 days ATGE_18 not applicable not applicable not applicable 409.2870
leaf leaf 7, petiole Wt 17 days ATGE_19 not applicable not applicable not applicable 472.1220
leaf leaf 7, proximal half Wt 17 days ATGE_20 not applicable not applicable not applicable 388.5388
leaf leaf 7, distal half Wt 17 days ATGE_21 not applicable not applicable not applicable 387.8961
leaf leaf Wt 15 days ATGE_91 not applicable not applicable not applicable 335.7031
leaf senescing leaves Wt 35 days ATGE_25 not applicable not applicable not applicable 795.1891
leaf cauline leaves Wt 21+ days ATGE_26 not applicable not applicable not applicable 592.4836
whole plant seedling, green parts Wt 7 days ATGE_7 not applicable not applicable not applicable 460.3442
whole plant seedling, green parts Wt 8 days ATGE_96 not applicable not applicable not applicable 618.0897
whole plant seedling, green parts Wt 8 days ATGE_97 not applicable not applicable not applicable 565.3102
whole plant seedling, green parts Wt 21 days ATGE_100 not applicable not applicable not applicable 435.7619
whole plant seedling, green parts Wt 21 days ATGE_101 not applicable not applicable not applicable 427.8729
whole plant developmental drift, entire rosette after transition to flowering, but before bolting Wt 21 days ATGE_22 not applicable not applicable not applicable 421.4908
whole plant as above Wt 22 days ATGE_23 not applicable not applicable not applicable 446.5614
whole plant as above Wt 23 days ATGE_24 not applicable not applicable not applicable 454.9977
whole plant vegetative rosette Wt 7 days ATGE_87 not applicable not applicable not applicable 346.8408
whole plant vegetative rosette Wt 14 days ATGE_89 not applicable not applicable not applicable 368.0539
whole plant vegetative rosette Wt 21 days ATGE_90 not applicable not applicable not applicable 443.4161
apex shoot apex, vegetative + young leaves Wt 7 days ATGE_4 not applicable not applicable not applicable 398.8279
apex shoot apex, vegetative Wt 7 days ATGE_6 not applicable not applicable not applicable 541.6744
apex shoot apex, transition (before bolting) Wt 14 days ATGE_8 not applicable not applicable not applicable 579.0500
apex shoot apex, inflorescence (after bolting) Wt 21 days ATGE_29 not applicable not applicable not applicable 769.2424
apex shoot apex, inflorescence (after bolting) clv3-7 21+ days ATGE_46 not applicable not applicable not applicable 674.8222
apex shoot apex, inflorescence (after bolting) lfy-12 21+ days ATGE_47 not applicable not applicable not applicable 551.2910
apex shoot apex, inflorescence (after bolting) ap1-15 21+ days ATGE_48 not applicable not applicable not applicable 618.4678
apex shoot apex, inflorescence (after bolting) ap2-6 21+ days ATGE_49 not applicable not applicable not applicable 653.6423
apex shoot apex, inflorescence (after bolting) ufo-1 21+ days ATGE_52 not applicable not applicable not applicable 607.2679
apex shoot apex, inflorescence (after bolting) ap3-6 21+ days ATGE_50 not applicable not applicable not applicable 592.3784
apex shoot apex, inflorescence (after bolting) ag-12 21+ days ATGE_51 not applicable not applicable not applicable 568.6866
flowers flowers stage 9 Wt 21+ days ATGE_31 not applicable not applicable not applicable 611.3805
flowers flowers stage 10/11 Wt 21+ days ATGE_32 not applicable not applicable not applicable 550.7117
flowers flowers stage 12 Wt 21+ days ATGE_33 not applicable not applicable not applicable 385.9358
flowers flower stage 12; multi-carpel gynoeceum; enlarged meristem; increased organ number clv3-7 21+ days ATGE_53 not applicable not applicable not applicable 439.4438
flowers flower stage 12; shoot characteristics; most organs leaf-like lfy-12 21+ days ATGE_54 not applicable not applicable not applicable 600.6200
flowers flower stage 12; sepals replaced by leaf-like organs, petals mostly lacking, has secondary flowers ap1-15 21+ days ATGE_55 not applicable not applicable not applicable 705.5536
flowers flower stage 12; no sepals or petals ap2-6 21+ days ATGE_56 not applicable not applicable not applicable 554.0478
flowers flower stage 12; filamentous organs in whorls two and three ufo-1 21+ days ATGE_59 not applicable not applicable not applicable 628.8559
flowers flower stage 12; no petals or stamens ap3-6 21+ days ATGE_57 not applicable not applicable not applicable 526.1649
flowers flower stage 12; no stamens or carpels ag-12 21+ days ATGE_58 not applicable not applicable not applicable 532.0289
flowers flowers stage 15 Wt 21+ days ATGE_39 not applicable not applicable not applicable 410.7344
flowers flower Wt 28 days ATGE_92 not applicable not applicable not applicable 465.6504
floral organs flowers stage 15, pedicels Wt 21+ days ATGE_40 not applicable not applicable not applicable 359.5425
floral organs flowers stage 12, sepals Wt 21+ days ATGE_34 not applicable not applicable not applicable 431.9214
floral organs flowers stage 15, sepals Wt 21+ days ATGE_41 not applicable not applicable not applicable 656.3626
floral organs flowers stage 12, petals Wt 21+ days ATGE_35 not applicable not applicable not applicable 426.6148
floral organs flowers stage 15, petals Wt 21+ days ATGE_42 not applicable not applicable not applicable 374.1473
floral organs flowers stage 12, stamens Wt 21+ days ATGE_36 not applicable not applicable not applicable 296.2841
floral organs flowers stage 15, stamen Wt 21+ days ATGE_43 not applicable not applicable not applicable 353.2181
floral organs mature pollen Wt 6 wk ATGE_73 not applicable not applicable not applicable 159.6789
floral organs flowers stage 12, carpels Wt 21+ days ATGE_37 not applicable not applicable not applicable 582.6124
floral organs flowers stage 15, carpels Wt 21+ days ATGE_45 not applicable not applicable not applicable 522.0025
seeds siliques, w/ seeds stage 3; mid globular to early heart embryos Wt 8 wk ATGE_76 not applicable not applicable not applicable 486.7632
seeds siliques, w/ seeds stage 4; early to late heart embryos Wt 8 wk ATGE_77 not applicable not applicable not applicable 487.9123
seeds siliques, w/ seeds stage 5; late heart to mid torpedo embryos Wt 8 wk ATGE_78 not applicable not applicable not applicable 479.7194
seeds seeds, stage 6, w/o siliques; mid to late torpedo embryos Wt 8 wk ATGE_79 not applicable not applicable not applicable 565.6467
seeds seeds, stage 7, w/o siliques; late torpedo to early walking-stick embryos Wt 8 wk ATGE_81 not applicable not applicable not applicable 451.5124
seeds seeds, stage 8, w/o siliques; walking-stick to early curled cotyledons embryos Wt 8 wk ATGE_82 not applicable not applicable not applicable 597.5500
seeds seeds, stage 9, w/o siliques; curled cotyledons to early green cotyledons embryos Wt 8 wk ATGE_83 not applicable not applicable not applicable 724.4454
seeds seeds, stage 10, w/o siliques; green cotyledons embryos Wt 8 wk ATGE_84 not applicable not applicable not applicable 663.4956


get table as tab-delimited text file


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